Jinqiu Xiao

FastaLake selects compact metaproteomic databases from large sequence reservoirs by de novo peptide lookup

FastaLake constructs compact metaproteomic databases from sequence resources to improve peptide identification without requiring matched metagenomic sequencing.

pmultiqc: An open-source, lightweight, and metadata-oriented QC reporting library for MS proteomics

pmultiqc generates metadata-aware QC reports for proteomics data using standardized metrics and integrates with existing workflows and cloud services.

Facilitating Analysis and Dissemination of Proteomics data through Metadata Integration in MaxQuant

This paper introduces metadata integration in MaxQuant to standardize and simplify proteomics data analysis and reuse.

Isobaric labeling update in MaxQuant

The paper updates MaxQuant for isobaric labeling data, showing improved accuracy and reduced batch effects using weighted median normalization.