Author

Tim Putman

Scripps Research InstituteORCID 0000-0002-4291-0737Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:database / resource· 4 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andra WaagmeesteriD· 3 shared Chunlei WuiD· 3 shared Andrew I. SuiD· 2 shared Benjamin M. GoodiD· 2 shared Gregory S. StuppiD· 2 shared Monica C. Muñoz-TorresiD· 2 shared Sebastian Burgstaller-MuehlbacheriD· 2 shared Alexander R. PicoiD· 1 shared

Activity by Year

2015-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersGenomics

Andra WaagmeesterORCID

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Author profile →

4 papers

Recent·Most cited

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

Ray Stefancsik, James P. Balhoff, Meghan A. Balk, Robyn L. Ball, Susan M. Bello, Anita R. Caron, Elissa J. Chesler, Vinícius de Souza, Sarah A. Gehrke, Melissa Anne Haendel, Laura Wiseman Harris, Nomi L. Harris, Arwa Ibrahim, Sebastian Koehler, Nicolas Matentzoglu, , David Osumi-Sutherland

This paper introduces OBA, a formalized ontology for biological attributes to facilitate data integration across phenotypic, genetic, and environmental data.

Mammalian Genome · Apr 19, 2023Peer-reviewedBioinformatics

Wikidata as a FAIR knowledge graph for the life sciences

Andra Waagmeester, Gregory S. Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M. Good, Malachi Griffith, Obi L. Griffith, Kristina Hanspers, Henning Hermjakob, Toby Hudson, Kevin Hybiske, Sarah Keating, Magnus Manske, Michael Mayers, Daniel Mietchen, Elvira Mitraka, , Andrew I. Su

The paper describes Wikidata as a FAIR knowledge graph for life sciences, showcasing its breadth, tools for integration, and use cases in biomedical analysis.

eLife · Mar 16, 2020Peer-reviewedBioinformatics

WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata.

Tim Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan Dunn, Monica C. Muñoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good

WikiGenomes provides a web platform for community curation of gene annotations in Wikidata, addressing the lack of resources for comprehensive genomic data curation.

Database · Jan 1, 2017Peer-reviewedGenomics

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Tim Putman, Sebastian Burgstaller, Andra Waagmeester, Chunlei Wu, Andrew I Su, Benjamin Good

The paper proposes a community-driven model using Wikidata to curate and integrate microbial genomic data, aiming to address the challenges of scalability and fragmentation in microbial genome curation.

bioRxiv · Nov 12, 2015Genomics