Author
Scripps Research InstituteORCID 0000-0002-7334-7852Unclaimed ORCID profile · follow to get notified of new preprints
9 papers
Recent·Most cited
Lance Hannestad, Vlado Dančík, Meera Godden, Imelda W. Suen, Kenneth C. Huellas-Bruskiewicz, Benjamin M. Good, Chris Mungall, Richard Bruskiewich
The paper introduces a REST API called Knowledge Beacon to standardize the discovery and integration of biomedical knowledge from distributed sources.
PLoS ONE · Mar 23, 2021Peer-reviewedBioinformatics
Justin Reese, Deepak Raveendran Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Muñoz-Torres, Melissa Anne Haendel, , Chris Mungall
KG-COVID-19 creates customizable knowledge graphs for COVID-19 response by integrating siloed biomedical data into structured formats for various research applications.
Patterns · Nov 9, 2020Peer-reviewedBioinformatics
Andra Waagmeester, Gregory S. Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M. Good, Malachi Griffith, Obi L. Griffith, Kristina Hanspers, Henning Hermjakob, Toby Hudson, Kevin Hybiske, Sarah Keating, Magnus Manske, Michael Mayers, Daniel Mietchen, Elvira Mitraka, , Andrew I. Su
The paper describes Wikidata as a FAIR knowledge graph for life sciences, showcasing its breadth, tools for integration, and use cases in biomedical analysis.
eLife · Mar 16, 2020Peer-reviewedBioinformatics
Núria Queralt-Rosiñach, Gregory S. Stupp, Tong Shu Li, Michael Mayers, Maureen E. Hoatlin, Matthew Might, Benjamin M. Good, Andrew I. Su
The paper presents a structured review of NGLY1 Deficiency as a knowledge graph, improving hypothesis generation through FAIR principles and enabling collaborative curation.
Database · Jan 1, 2020Peer-reviewedBioinformatics
Ginger Tsueng, Max Nanis, Jennifer Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
The paper demonstrates that citizen scientists can perform relationship extraction from biomedical abstracts using Mark2Cure, highlighting the importance of accurate named entity recognition.
Bioinformatics · Aug 30, 2019Peer-reviewedBioinformatics
Benjamin M. Good, Sarah Santini, Margaret M. Wallace, Nicholas Fortugno, John Szeder, Patrick Mooney, Jérôme Waldispühl, Ginger Tsueng, Andrew I. Su
The paper introduces Science Game Lab, a platform to support the creation and enhancement of scientific games with a purpose.
bioRxiv · Jul 10, 2017 · PreprintBioinformatics
Tim Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan Dunn, Monica C. Muñoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good
WikiGenomes provides a web platform for community curation of gene annotations in Wikidata, addressing the lack of resources for comprehensive genomic data curation.
Database · Jan 1, 2017Peer-reviewedGenomics
Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Paul Pavlidis, Lynn Schriml, Benjamin M. Good, Andrew I. Su
The paper imports human and mouse gene and protein data into Wikidata to improve data integration and dissemination, enabling updates to Wikipedia Gene Wiki infoboxes and multilingual access.
Database · Jan 1, 2016Peer-reviewedBioinformatics
Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good
The paper describes Wikidata as a platform for integrating and disseminating life science data, linking genes, drugs, and diseases to enhance Wikipedia and foster community collaboration.
bioRxiv · Nov 16, 2015 · PreprintBioinformatics