Chunlei Wu

The paper develops a metadata schema based on Schema.org to improve the findability of infectious disease datasets and computational tools across repositories.

The paper generates a rat RNA-seq transcriptomic atlas and uses gene correlation networks to identify tissue-specific transcript clusters and biological processes.

The paper introduces the BioThings SDK, a toolkit for building high-performance data APIs in biomedical research, enabling integration of annotations from multiple data sources.

The paper introduces a browser-based tool to help researchers and repository developers use schema.org standards to improve the FAIRness of biomedical data.

The paper describes Wikidata as a FAIR knowledge graph for life sciences, showcasing its breadth, tools for integration, and use cases in biomedical analysis.

The paper demonstrates how open innovation competitions improve computational biology methods for antibody clustering, gene expression imputation, and CMap querying.

The paper presents a tool that uses search engines and natural language processing to access and summarize clinical variant information from multiple genomic resources.

The paper integrates public and new RNA-seq data to create a chicken mRNA expression atlas, revealing tissue-specific gene clusters and developmental patterns.

The paper implements JSON-LD on BioThings APIs to enhance interoperability through semantic annotations, enabling cross-linking and improved query capabilities.

This paper presents a high-resolution gene expression atlas for sheep, identifying transcriptional signatures and functional annotations across tissues and developmental stages.

EXPLANe annotates scientific posters with genetic variant information using mobile devices and optical text recognition.

WikiGenomes provides a web platform for community curation of gene annotations in Wikidata, addressing the lack of resources for comprehensive genomic data curation.

CIViC is a knowledgebase that crowdsources expert input to interpret the clinical significance of cancer variants, providing open-access resources for precision medicine.

MyGene.info and MyVariant.info offer APIs for querying gene and variant annotations using a scalable cloud-based infrastructure.

The paper proposes a community-driven model using Wikidata to curate and integrate microbial genomic data, aiming to address the challenges of scalability and fragmentation in microbial genome curation.

MyGene.info provides a scalable service for querying gene annotations across species, supporting over 14K species and 17M genes with 50+ annotation types through two web service endpoints.