Author

Andrew I Su

Scripps Research Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 4 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 4 Research Focus:database / resource· 4 Approach:experimental assay· 4 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

Chunlei WuiD· 3 shared Benjamin M Good· 2 shared Ginger TsuengiD· 2 shared Gregory Stupp· 2 shared Aaron P Graubert· 1 shared Adam C Coffman· 1 shared Adam Mark· 1 shared Alex H Wagner· 1 shared

Activity by Year

2015-2019 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCancer Biology

Chunlei WuORCID

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Time-resolved compound repositioning predictions on a text-mined knowledge network

Michael Mayers, Tong Shu Li, Núria Queralt-Rosinach, Andrew I Su

The paper evaluates a compound repositioning algorithm using time-resolved biomedical knowledge networks, finding that performance peaks when using older data and declines with newer data.

bioRxiv · May 8, 2019 · PreprintBioinformatics

Citizen Science for Mining the Biomedical Literature

Ginger Tsueng, Max Nanis, Jennifer Fouquier, Benjamin M Good, Andrew I Su

This paper demonstrates that volunteer citizen scientists can perform named entity recognition in biomedical literature with high accuracy using a web-based platform, offering a scalable alternative to paid microtask platforms.

Citizen Science: Theory and Practice · Dec 31, 2016Peer-reviewedBioinformatics

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer.

Malachi Griffith, Nicholas C Spies, Kilannin Krysiak, Adam C Coffman, Joshua F McMichael, Benjamin J Ainscough, Damian T Rieke, Arpad M Danos, Lynzey Kujan, Cody A Ramirez, Alex H Wagner, Zachary L Skidmore, Connor J Liu, Martin R Jones, Rachel L Bilski, , Elaine R Mardis

CIViC is a knowledgebase that crowdsources expert input to interpret the clinical significance of cancer variants, providing open-access resources for precision medicine.

bioRxiv · Sep 1, 2016Cancer Biology

A comprehensive and scalable database search system for metaproteomics

Sandip Chatterjee, Gregory Stupp, Sung Kyu (Robin) Park, Jean-Christophe Ducom, John R Yates, Andrew I Su, Dennis W. Wolan

The paper introduces ComPIL, a scalable database system for metaproteomics, enhancing peptide and protein identification in complex samples.

bioRxiv · May 18, 2016Bioinformatics

MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services

Jiwen Xin, Adam Mark, Cyrus Afrasiabi, Ginger Tsueng, Moritz Juchler, Nikhil Gopal, Gregory Stupp, Timothy Putman, Benjamin Ainscough, Obi Griffith, Ali Torkamani, Patricia Whetzel, Christopher J Mungall, Sean Mooney, Andrew I Su, Chunlei Wu

MyGene.info and MyVariant.info offer APIs for querying gene and variant annotations using a scalable cloud-based infrastructure.

bioRxiv · Dec 30, 2015Bioinformatics

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Tim Putman, Sebastian Burgstaller, Andra Waagmeester, Chunlei Wu, Andrew I Su, Benjamin Good

The paper proposes a community-driven model using Wikidata to curate and integrate microbial genomic data, aiming to address the challenges of scalability and fragmentation in microbial genome curation.

bioRxiv · Nov 12, 2015Genomics