Author

Lauren J. Hodkinson

Emory UniversityORCID 0000-0002-4458-9625Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:Drosophila· 5 Assay:ChIP-seq· 4 Approach:experimental assay· 4 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Leila E. RiederiD· 5 shared Casey A. SchmidtiD· 3 shared Heather Skye ComstraiD· 3 shared Julia L. GrossiD· 2 shared Mellisa Xie· 2 shared Pamela P. Diaz-SaldanaiD· 2 shared Tsutomo AokiiD· 2 shared Alvaro Perez DaissoniD· 1 shared

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2022-2024 · peak 2/yr

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10 top collaborators · 33 mutual co-author links

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5 shared papersGenetics

Leila E. RiederORCID

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5 papers

Recent·Most cited

Cis element length variability does not confer differential transcription factor occupancy at the D. melanogaster histone locus

Lauren J. Hodkinson, Leila E. Rieder

The paper investigates whether cis element length variability affects transcription factor occupancy at the D. melanogaster histone locus and finds no such bias.

bioRxiv · Jun 24, 2024 · PreprintGenetics

Sequence reliance of a Drosophila context-dependent transcription factor

Lauren J. Hodkinson, Julia L. Gross, Casey A. Schmidt, Pamela P. Diaz-Saldana, Tsutomo Aoki, Leila E. Rieder

The paper shows that the Drosophila transcription factor CLAMP uses both cis element and local sequence information to perform context-specific functions at different genomic loci.

bioRxiv · Dec 7, 2023 · PreprintGenetics

A bioinformatics screen reveals Hox and chromatin remodeling factors at the Drosophila histone locus

Lauren J. Hodkinson, Connor Smith, Heather Skye Comstra, Eric H. Albanese, Bukola A. Ajani, Kawsar Arsalan, Alvaro Perez Daisson, Katherine B. Forrest, Elijah H. Fox, Matthew R. Guerette, Samia Khan, Madeleine P. Koenig, Shivani Lam, Ava S. Lewandowski, Lauren J. Mahoney, , Leila E. Rieder

The paper identifies new Hox and chromatin remodeling factors interacting with the Drosophila histone gene array using a ChIP dataset screen.

bioRxiv · Jan 6, 2023 · PreprintMolecular Biology

MSL2 targets histone genes in Drosophila virilis

Mellisa Xie, Lauren J. Hodkinson, Heather Skye Comstra, Pamela P. Diaz-Saldana, Hannah E. Gilbonio, Julia L. Gross, Robert M Chavez, Gwyn L. Puckett, Tsutomu Aoki, Paul D. Schedl, Leila E. Rieder

The paper identifies MSL2 recruitment to a specific histone locus in D. virilis and shows differences in cis-regulatory mechanisms compared to D. melanogaster.

bioRxiv · Dec 14, 2022 · PreprintGenetics

Max is likely not at the Drosophila histone locus

Mellisa Xie, Heather Skye Comstra, Casey A. Schmidt, Lauren J. Hodkinson, Leila E. Rieder

The paper investigates whether Max is part of the Drosophila histone locus body and concludes it is not based on ChIP-seq and ChIP-nexus data.

bioRxiv · Sep 11, 2022 · PreprintGenetics