Carl Mathias Kobel

This study swaps rumen contents between low- and high-methane-yielding cows and finds that methane production remains tied to the host, not the microbiome, with asymmetric microbiome reconstitution observed.

OmniCorr is an R package that clusters and visualizes multi-omics data to identify putative host-microbiota interactions across different biological systems.

CompareM2 is a pipeline that compares microbial genomes to generate reports on quality, annotation, taxonomy, function, and phylogeny.

The paper identifies two rumen community types linked to protozoal populations and shows their impact on microbial interactions and metabolite profiles.

This paper trains an artificial neural network to predict microbial genome-scale metabolic networks directly from 16S rRNA gene sequences, enabling metabolic analysis of microbes without full genomes.