Johanna von Wachsmann

The paper introduces a fast clustering tool for bacterial genomes, enabling efficient analysis of millions of genomes and revealing taxonomic insights.

The paper develops a model to analyze pangenome dynamics and finds that differences in bacterial pangenomes are mainly due to variation in the number of rapidly exchanged genes.

PopPIPE clusters bacterial populations and detects transmission events using reference-free methods, outperforming traditional approaches in nosocomial outbreak analysis.

CELEBRIMBOR improves core gene identification in metagenome-assembled genomes by adjusting frequency thresholds based on genome completeness.

This paper introduces SKA2, a method for rapid and accurate genotyping of bacterial populations, showing superior variant recall and no false positives in outbreak simulations.

A uniformly processed set of 2,440,377 bacterial and archaeal genomes with search tools and annotations, plus an AI-mined peptide set yielding ATB20, active in a mouse skin infection model.