Author
Hasso Plattner InstituteORCID 0000-0002-6823-5995Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Fábio Malcher Miranda, Vasco Azevedo, Rommel Thiago Jucá Ramos, Bernhard Y. Renard, Vitor C. Piro
HiTaC is a hierarchical machine learning model for fungal ITS sequence classification that outperforms existing methods on noisy data.
BMC Bioinformatics · Jul 2, 2024Peer-reviewedBioinformatics
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey A. Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline Brito, C. Titus Brown, Jan P. Buchmann, Aydın Buluç, , Till Strowig
The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.
Nature Methods · Apr 1, 2022Peer-reviewedBioinformatics
Alice Wittig, Fábio Malcher Miranda, Martin Hölzer, Tom Altenburg, Jakub M. Bartoszewicz, Sebastian Beyvers, Marius Alfred Dieckmann, Ulrich Genske, Sven H. Giese, Melania Nowicka, Hugues Richard, Henning Schiebenhoefer, Anna-Juliane Schmachtenberg, Paul Sieben, Ming Tang, , Stephan Fuchs
CovRadar provides a platform for tracking and filtering SARS-CoV-2 mutations in the spike gene, enabling users to analyze and visualize mutational changes and spatio-temporal distributions.
bioRxiv · Feb 3, 2021 · PreprintBioinformatics
Fábio Malcher Miranda, Cassio Batista, Artur Silva, Jefferson Magalhaes De Morais, Nelson Neto, Rommel Thiago Jucá Ramos
This paper introduces GCSplit, a tool that partitions metagenomic data by GC content to improve assembly quality and reduce computational demands.
Lecture notes in computer science · Jan 1, 2018Peer-reviewedBioinformatics