Author

Jiaji George Chen

Boston UniversityORCID 0000-0002-4565-832XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 4 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Organism:human· 2 Research Focus:spatial domain detection· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Ruben DriesiD· 4 shared Iqra Amin· 3 shared Veronica JarzabekiD· 3 shared Edward C. RuiziD· 2 shared Adriana SistigiD· 1 shared Alexandra B. YsasiiD· 1 shared Anirudh JaishankariD· 1 shared Anthony K. YeungiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersBioinformatics

Ruben DriesORCID

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Author profile →

4 papers

Recent·Most cited

dbverse scales spatial omics analysis with embedded analytical databases

Edward C. Ruiz, Veronica Jarzabek, Jiaji George Chen, Timur Rizvanov, Iqra Amin, Ruben Dries

dbverse enables efficient analysis of large spatial omics datasets by using embedded databases, outperforming traditional methods in runtime.

bioRxiv · Aug 18, 2026 · PreprintBioinformatics

High resolution spatial profiling of the hematopoietic landscape of the murine lung

Nicholas J. Skvir, Alexandra B. Ysasi, Veronica Jarzabek, Anthony K. Yeung, Jiaji George Chen, Ruben Dries, George J. Murphy

This paper creates a high-resolution spatial transcriptomic map of the murine lung's hematopoietic landscape, focusing on megakaryocytes and their interactions with vascular and stromal environments.

iScience · Jul 1, 2026Peer-reviewedCell Biology

Clinical feasibility of spatial transcriptomics using discarded tissue from diagnostic breast biopsies

Jeffrey P. Sheridan, Quynh Sun, Jiaji George Chen, Yibing Wei, Veronica Jarzabek, Anirudh Jaishankar, Iqra Amin, Lila Sultan, Thea Nalan, Sarah B. Mueller, Eric Burks, Lubna H. Suaiti, Christopher M. Heaphy, Naomi Yu Ko, Ruben Dries

This study demonstrates that spatial transcriptomics can be performed on discarded breast biopsy tissue to generate high-quality data for tumor microenvironment analysis.

bioRxiv · Dec 30, 2025 · PreprintGenomics

Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem

Jiaji George Chen, Joselyn Chávez, Matthew O’Brien, Junxiang Xu, Edward C. Ruiz, Wen Wang, Iqra Amin, Irzam Sarfraz, Pratishtha Guckhool, Adriana Sistig, Guo‐Cheng Yuan, Ruben Dries

Giotto Suite provides a modular, open-source framework for analyzing spatial multi-omics data across scales and technologies.

bioRxiv · Nov 26, 2023 · PreprintBioinformatics