Author

Ali Sinan Köksal

University of California, BerkeleyORCID 0000-0002-4595-4903Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:proteomics· 1 Approach:statistical model· 1 Organism:yeast· 1

Frequent Co-Authors

Aaron McKennaiD· 1 shared Alejandro Wolf‐YadliniD· 1 shared Anthony GitteriD· 1 shared Dylan R. CroniniD· 1 shared Ernest FraenkeliD· 1 shared Jasmin FisheriD· 1 shared Kirsten Beck· 1 shared Matthew E. MacGilvray· 1 shared

Activity by Year

2018-2018 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Aaron McKennaORCID

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1 paper

Recent·Most cited

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

Ali Sinan Köksal, Kirsten Beck, Dylan R. Cronin, Aaron McKenna, Nathan D. Camp, Saurabh Srivastava, Matthew E. MacGilvray, Rastislav Bodík, Alejandro Wolf‐Yadlin, Ernest Fraenkel, Jasmin Fisher, Anthony Gitter

The paper introduces a computational method to identify missing signaling pathway elements from temporal phosphoproteomic data, demonstrating its effectiveness in both human EGF response and yeast osmotic stress response.

Cell Reports · Sep 1, 2018Peer-reviewedBioinformatics