ConvMut: Exploration of viral convergent mutations along phylogenies
Tommaso Alfonsi, Anna Bernasconi, Emma Fanfoni…·Daniele Focosi
ConvMut identifies recurrent mutations in SARS-CoV-2 phylogenies to aid in vaccine and antibody design.
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Politecnico di MilanoORCID 0000-0002-4707-8425Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
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Tommaso Alfonsi, Anna Bernasconi, Emma Fanfoni…·Daniele Focosi
ConvMut identifies recurrent mutations in SARS-CoV-2 phylogenies to aid in vaccine and antibody design.
Matteo Chiara, Tommaso Alfonsi, Stefano Ceri…·Anna Bernasconi
The paper identifies distinctive H5N1 viral genome signatures linked to repeated spillovers into U.S. dairy cattle, highlighting genetic diversity and geographic origins.
Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri
FluWarning detects emerging influenza A virus spillovers using codon bias and dinucleotide composition anomalies, identifying pdm09 and B3.13 genotypes before their spread.
Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri
This paper introduces RecombinHunt, a data-driven method for detecting recombinant viral genomes, which accurately identifies recombinant SARS-CoV-2 lineages and applies to other viral epidemics.
Arif Canakoglu, Pietro Pinoli, Anna Bernasconi…·Stefano Ceri
ViruSurf is a database that integrates viral sequences and metadata from multiple sources, enabling complex searches to support research on viral sequences and their variants.