Abdelkader Behdenna

CMS4-focused multi-omic integration enhances antigen target identification in colorectal cancer

This paper identifies CMS4-specific antigen targets in colorectal cancer using a large harmonized multi-omic knowledge base and prioritization pipeline, revealing 236 candidates with therapeutic potential.

Differential Expression Analysis with InMoose, the Integrated Multi-Omic Open-Source Environment in Python

InMoose provides a Python implementation of differential expression tools with results similar to R-based tools, ensuring reproducibility across languages.

Dynamics of influenza transmission in vampire bats revealed by longitudinal monitoring and a large-scale anthropogenic perturbation

The paper uses longitudinal data and a cull event to show vampire bats maintain influenza virus independently of fruit bats and that culling reduces transmission.

Bulk Transcriptomic Analysis with InMoose, the Integrated Multi-Omic Open-Source Environment in Python

The paper introduces InMoose, an open-source Python environment for bulk transcriptomic analysis, offering tools for data simulation, batch correction, and differential analysis.

pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

pyComBat provides a Python implementation of ComBat and ComBat-Seq for batch effect correction in microarray and RNA-Seq data, offering similar performance with improved speed and open-source accessibility.