Author

Aryo Pradipta Gema

University of EdinburghORCID 0009-0007-1163-3531Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

Abdelkader BehdennaiD· 1 shared Akpéli V. NordoriD· 1 shared Álvaro Serrano‐MorrásiD· 1 shared Antonia S. J. S. MeyiD· 1 shared Benjamin S. Suutari· 1 shared Chloé‐Agathe AzencottiD· 1 shared Guillaume Appé· 1 shared Ian Xi Yang· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Abdelkader BehdennaORCID

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2 papers

Recent·Most cited

BioinformaticsJournal of Chemical Information and ModelingPeer-reviewedOct 31, 2025

Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models

Rohan Gorantla, Aryo Pradipta Gema, Ian Xi Yang…·Antonia S. J. S. Mey

This paper introduces BALM, a deep learning framework for predicting protein-ligand binding affinity using pre-trained language models, showing better performance than traditional methods in few-shot scenarios.

20 citationstop 1%

protein structuredeep learning

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BioinformaticsBMC BioinformaticsPeer-reviewedDec 6, 2023

pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

Abdelkader Behdenna, Maximilien Colange, Julien Haziza…·Akpéli V. Nordor

pyComBat provides a Python implementation of ComBat and ComBat-Seq for batch effect correction in microarray and RNA-Seq data, offering similar performance with improved speed and open-source accessibility.

170 citationstop 1%

bulk RNA-seqstatistical model

𝕏 PostBluesky