David Peede

Joint ancestry inference reveals the landscape of archaic introgression in admixed populations

TRACTINATOR infers continental and archaic ancestry in admixed genomes using deep learning, revealing archaic introgression patterns in Latin American populations.

Sex differentiation, divergence, and introgression in the leishmaniasis vector Lutzomyia longipalpis

The paper investigates genetic diversity and sex differentiation in Lutzomyia longipalpis, identifying sex chromosomes and population structure across South America.

Ancient Mongolian aurochs genomes reveal sustained introgression and management in East Asia

Ancient Mongolian aurochs genomes show sustained male introgression and a link to Hereford cattle, but no genetic signature in modern East Asian breeds.

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

The paper expands the stdpopsim species catalog and improves genome simulations by adding non-crossover recombination and species-specific annotations, making simulations more realistic for non-model organisms.