Anthony M. Cruz

BAP1 loss and PRAME expression converge to remodel the tumor-immune ecosystem during uveal melanoma progression

The paper profiles single-cell data from uveal melanoma to show BAP1 loss and PRAME expression drive convergent immunoregulatory changes and immune resistance.

UPhyloplot2: Visualizing Phylogenetic Trees from Single-Cell RNA-seq Data

UPHyloplot2 generates phylogenetic plots from inferCNV output files to visualize tumor clonality inferred from single-cell RNA-seq data.

PieParty: Visualizing cells from scRNA-seq data as pie charts

PieParty visualizes scRNA-seq data as pie charts where each cell's slices represent gene expression, enabling intuitive and dense visualization of multiple genes and networks.