Daniel García‐Ruano

SpaceBlocks: an expert-supervised workflow for cohort-level spatial transcriptomics analysis

SpaceBlocks is a workflow for reproducible, expert-supervised spatial transcriptomics analysis across platforms, identifying new cell types and differentially expressed genes in multiple datasets.

Spatial and Bulk Transcriptomic Profiling Defines the Molecular Evolution of Cutaneous Squamous Cell Carcinoma and Reveals Stage-Specific Biomarkers of Clinical Relevance

This study uses spatial and bulk transcriptomics to map cSCC progression, identifies stage-specific gene programs, and finds prognostic biomarkers relevant across cancers.

Uncertainty-aware benchmarking reveals ambiguous transcripts in mRNA-lncRNA classification

The paper benchmarks transcript classifiers to identify ambiguous mRNA-lncRNA classifications by analyzing uncertainty and feature contributions.

Engineering heterothallic strains in fission yeast

This paper describes a method to efficiently generate heterothallic fission yeast strains using CRISPR-Cas9 and a mating type locus alteration.