Author

Alexander N. Stein

Columbia UniversityORCID 0000-0002-5039-4330Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Research Focus:dimensionality reduction· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Anoushka JoglekariD· 2 shared Hagen TilgneriD· 2 shared Adam FrankishiD· 1 shared Ahmed Essam MahfouziD· 1 shared Andrey D. PrjibelskiiD· 1 shared Anna Katharina SchluscheiD· 1 shared Ashley Hayes· 1 shared August Benjamin SmitiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Anoushka JoglekarORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMay 23, 2022

ScisorWiz: Visualizing Differential Isoform Expression in Single-Cell Long-Read Data

Alexander N. Stein, Anoushka Joglekar, Chi-Lam Poon, Hagen Tilgner

ScisorWiz visualizes differential isoform expression in single-cell long-read data, highlighting alternative exons and SNVs across cell types and brain regions.

27 citations

scRNA-seqlong-read sequencing

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NeuroscienceNature CommunicationsPeer-reviewedJan 19, 2021

Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

Anoushka Joglekar, Andrey D. Prjibelski, Ahmed Essam Mahfouz…·Hagen Tilgner

The paper identifies brain-region specific splicing patterns at single-cell and spatial resolution in postnatal mice, revealing cell-type specific and region-specific isoform expression.

229 citationstop 1%

mouselong-read sequencing

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