Author

Willem Bonnaffé

University of OxfordORCID 0000-0002-5053-8891Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:spatial domain detection· 1 Approach:statistical model· 1

Frequent Co-Authors

Alain DanetiD· 1 shared Andrew P. BeckermaniD· 1 shared Anette Magnussen· 1 shared Ashley Wong· 1 shared Claire Edwards· 1 shared Clare Verrill· 1 shared Colin FontaineiD· 1 shared Cristian SoituiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperEcology

Alain DanetORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 27, 2026

Scalable spatial DNA sequencing from archival tissue maps copy number subclones

Cristian Soitu, Ugur Sahin, Anette Magnussen…·Srinivasa R. Rao

This paper introduces ARMS DNAseq, a scalable spatial genomic assay that maps copy number subclones in archival tissue, revealing tumor evolution and subclone associations with morphology and transcriptomic features.

DOI 10.64898/2026.08.24.746226

humanwhole-genome sequencing

EcologybioRxivPreprintApr 23, 2025

Biodiversity temporal trends are reshaping food web structure and redundancy in riverine ecosystems

Alain Danet, Loubna El Madouri, Willem Bonnaffé…·Élisa Thébault

The paper analyzes biodiversity and food web time series from riverine fish communities to show how biodiversity loss affects food web structure and redundancy.

DOI 10.1101/2025.04.23.649202

statistical modelecology & biodiversity