Author

Anette Magnussen

University of Oxford

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Freddie Charles HamdyiD· 2 shared Srinivasa R. RaoiD· 2 shared Alastair D.G. LambiD· 1 shared Andrew M. EricksoniD· 1 shared Ashley Wong· 1 shared Claire Edwards· 1 shared Clare Verrill· 1 shared Cristian SoituiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersGenomics

Freddie Charles HamdyORCID

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2 papers

Recent·Most cited

Scalable spatial DNA sequencing from archival tissue maps copy number subclones

Cristian Soitu, Ugur Sahin, Anette Magnussen, Ashley Wong, Willem Bonnaffé, Mengran Fan, Merve Bilici, Simon Davis, Román Fischer, Jasmine Reese, Toby House, Sorayya Moradi, Renuka Teague, Olaf Ansorge, Stefano Malacrino, , Srinivasa R. Rao

This paper introduces ARMS DNAseq, a scalable spatial genomic assay that maps copy number subclones in archival tissue, revealing tumor evolution and subclone associations with morphology and transcriptomic features.

bioRxiv · Aug 27, 2026 · PreprintGenomics

Clonal phylogenies inferred from bulk, single cell, and spatial transcriptomic analysis of cancer

Andrew M. Erickson, Sandy Figiel, Timothy Rajakumar, Srinivasa R. Rao, Wencheng Yin, Dimitrios Doultsinos, Anette Magnussen, Reema Singh, Ninu Poulose, Richard J. Bryant, Olivier Cussenot, Freddie Charles Hamdy, Dan J. Woodcock, Ian Geoffrey Mills, Alastair D.G. Lamb

The paper evaluates the accuracy of transcript-based inferred tumor phylogenies compared to DNA-based phylogenies in prostate cancer using single-cell, spatial transcriptomic, and bulk data.

bioRxiv · Feb 26, 2023 · PreprintBioinformatics