Author

Thomas M. Reimonn

University of Massachusetts Chan Medical SchoolORCID 0000-0002-5129-7989Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:Hi-C· 2 Organism:human· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Hoang TraniD· 2 shared Nezar A. AbdennuriD· 2 shared Aidan McGrath‐Conwell· 1 shared Aleksandra A. GalitsynaiD· 1 shared Benjamin J. HarrisoniD· 1 shared D. L. LiuiD· 1 shared Denis L. Lafontaine· 1 shared Derek C. MolliveriD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersGenomics

Hoang TranORCID

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3 papers

Recent·Most cited

Stepwise reorganization of chromosome conformation and nuclear organization during stem cell differentiation

Xiangru Huo, Denis L. Lafontaine, Thomas M. Reimonn, Liyan Yang, Richard Siller, Jack D. Huey, Jiang Min, Aleksandra A. Galitsyna, Vedat Yilma, Krishna Mohan Parsi, Emily Navarrete, Hoang Tran, Leonid A. Mirny, René Maehr, Johan Harmen Gibcus, , Nezar A. Abdennur

The paper temporally maps nuclear reorganization during human stem cell differentiation and identifies three temporally ordered transitions in nuclear structure and function.

bioRxiv · Sep 18, 2026 · PreprintGenomics

Joint decomposition of Hi-C maps reveals salient features of genome architecture across tissues and development

Thomas M. Reimonn, Vedat O. Yilmaz, Hoang Tran, Garrett Ng, D. L. Liu, Nezar A. Abdennur

The paper introduces a framework to jointly decompose Hi-C maps across tissues and development, revealing distinct nuclear architecture patterns and improving gene expression prediction.

bioRxiv · Aug 7, 2025 · PreprintGenomics

Members of the CUGBP Elav-Like Family of RNA-Binding Proteins are Expressed in Distinct Populations of Primary Sensory Neurons

Eliza Grlickova‐Duzevik, Thomas M. Reimonn, Merilla Michael, Tina M. Tian, Jordan N. Owyoung, Aidan McGrath‐Conwell, Peter Neufeld, Madison G. Mueth, Derek C. Molliver, Patricia Jillian Ward, Benjamin J. Harrison

The paper identifies CELF family RNA-binding proteins expressed in distinct populations of DRG neurons and their potential role in pain and neuronal regeneration.

The Journal of Comparative Neurology · Jul 8, 2023Peer-reviewedNeuroscience