Author

Emily Navarrete

Massachusetts Institute of TechnologyORCID 0000-0002-3986-8099Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:experimental assay· 2 Assay:Hi-C· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Job DekkeriD· 2 shared Leonid A. MirnyiD· 2 shared Aleksandra A. GalitsynaiD· 1 shared Allana Schooley· 1 shared Clio B. HockensiD· 1 shared Denis L. Lafontaine· 1 shared Edward J. BaniganiD· 1 shared Elissa P. LeiiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersGenomics

Job DekkerORCID

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Author profile →

3 papers

Recent·Most cited

Stepwise reorganization of chromosome conformation and nuclear organization during stem cell differentiation

Xiangru Huo, Denis L. Lafontaine, Thomas M. Reimonn, Liyan Yang, Richard Siller, Jack D. Huey, Jiang Min, Aleksandra A. Galitsyna, Vedat Yilma, Krishna Mohan Parsi, Emily Navarrete, Hoang Tran, Leonid A. Mirny, René Maehr, Johan Harmen Gibcus, , Nezar A. Abdennur

The paper temporally maps nuclear reorganization during human stem cell differentiation and identifies three temporally ordered transitions in nuclear structure and function.

bioRxiv · Sep 18, 2026 · PreprintGenomics

Unique territorial and compartmental organization of chromosomes in the holocentric silkworm

José Gil, Emily Navarrete, Clio B. Hockens, Neil Chowdhury, Sameer Abraham, Gaetan Cornilleau, Elissa P. Lei, Julien Mozziconacci, Edward J. Banigan, Leah F. Rosin, Leonid A. Mirny, Héloïse Muller, Ines Anna Drinnenberg

The paper discovers a novel chromatin folding structure, compartment S, in the silkworm Bombyx mori using Hi-C, showing unique loop extrusion and contact patterns.

The EMBO Journal · Feb 2, 2026Peer-reviewedGenomics

Interphase chromosome conformation is specified by distinct folding programs inherited via mitotic chromosomes or through the cytoplasm

Allana Schooley, Sergey V. Venev, Vasilisa Aksenova, Emily Navarrete, Mary Dasso, Job Dekker

The paper investigates how interphase chromosome conformation is re-established after mitosis by distinguishing between chromosome-intrinsic and cytoplasmic inheritance mechanisms.

bioRxiv · Sep 16, 2024 · PreprintGenomics