Author

Chayan Kumar Saha

Umeå Centre for Microbial ResearchORCID 0000-0002-5357-517XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:experimental assay· 2 Assay:protein sequence· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Gemma Catherine AtkinsoniD· 2 shared Harald Brolin· 1 shared Henrik StrahliD· 1 shared Hiraku TakadaiD· 1 shared James W. GrimshawiD· 1 shared Lionel GuyiD· 1 shared Mariliis HinnuiD· 1 shared Marje KasariiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Gemma Catherine AtkinsonORCID

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Author profile →

3 papers

Recent·Most cited

FlashFold: a standalone command-line tool for accelerated protein structure and stoichiometry prediction

Chayan Kumar Saha, Mohammad Roghanian, Susanne Häußler, Lionel Guy

FlashFold predicts protein structures and stoichiometry faster than AlphaFold3 with minimal accuracy loss and supports custom sequence databases.

bioRxiv · Jan 23, 2025 · PreprintBioinformatics

Predicting Functional Associations using Flanking Genes (FlaGs)

Chayan Kumar Saha, Rodrigo Sanches Pires, Harald Brolin, Maxence Delannoy, Gemma Catherine Atkinson

FlaGs predicts functional associations by analyzing gene neighborhood conservation across species, revealing new toxin-antitoxin systems in prokaryotes and bacteriophages.

bioRxiv · May 2, 2020 · PreprintBioinformatics

ABCF ATPases involved in protein synthesis, ribosome assembly and antibiotic resistance: structural and functional diversification across the tree of life

Victoriia Murina, Marje Kasari, Hiraku Takada, Mariliis Hinnu, Chayan Kumar Saha, James W. Grimshaw, Takahiro Seki, Michael Reith, Marta Putrinš, Tanel Tenson, Henrik Strahl, Vasili Hauryliuk, Gemma Catherine Atkinson

The paper analyzes ABCF ATPases across 4505 genomes to uncover their diversity, subfamily relationships, and roles in antibiotic resistance and ribosome function.

Journal of Molecular Biology · Dec 28, 2018Peer-reviewedMolecular Biology