Author

Megan Aubrey

University of California San DiegoORCID 0000-0002-5448-2960Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Cornelis MurreiD· 2 shared Alexandra BortnickiD· 1 shared Arpita Prusy· 1 shared Kenian Chen· 1 shared Matthew Denholtz· 1 shared Olga K. DudkoiD· 1 shared Vivek Chandra· 1 shared Yin C Lin· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersBiophysics

Cornelis MurreORCID

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2 papers

Recent·Most cited

A hierarchy of spatial confinements governs chromatin dynamics and genomic encounters

Megan Aubrey, Arpita Prusy, Olga K. Dudko, Cornelis Murre

The paper investigates how transcription and loop extrusion create spatial confinements that regulate genomic encounters in the immunoglobulin heavy chain locus.

bioRxiv · Jul 16, 2026 · PreprintBiophysics

An inter-chromosomal transcription hub activates the unfolded protein response in plasma cells

Alexandra Bortnick, Zhaoren He, Megan Aubrey, Vivek Chandra, Matthew Denholtz, Kenian Chen, Yin C Lin, Cornelis Murre

bioRxiv · Apr 7, 2018 · PreprintImmunology