Author

Renan N. D. Almeida

University of TorontoORCID 0000-0002-5482-8255Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1

Frequent Co-Authors

David S. GuttmaniD· 2 shared Pauline W. WangiD· 2 shared Alexandre MarteliD· 1 shared Bevan Simon WeiriD· 1 shared Cedoljub Bundalovic-TormaiD· 1 shared Darrell DesveauxiD· 1 shared Maggie A. MiddletoniD· 1 shared Marcus M. DilloniD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersGenomics

David S. GuttmanORCID

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2 papers

Recent·Most cited

Predictive Modeling of Pseudomonas syringae Virulence on Bean using Gradient Boosted Decision Trees

Renan N. D. Almeida, Michael Greenberg, Cedoljub Bundalovic-Torma, Alexandre Martel, Pauline W. Wang, Maggie A. Middleton, Syama Chatterton, Darrell Desveaux, David S. Guttman

This paper uses gradient boosted decision trees to predict virulence of Pseudomonas syringae isolates on bean using genomic data, finding that PG3 strains are more host-specific than PG2 strains.

PLoS Pathogens · Jul 25, 2022Peer-reviewedGenomics

Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

Marcus M. Dillon, Shalabh Thakur, Renan N. D. Almeida, Pauline W. Wang, Bevan Simon Weir, David S. Guttman

The paper analyzes the evolutionary relationships of Pseudomonas syringae strains using whole-genome sequencing and finds that recombination maintains genetic cohesion, particularly among primary phylogroups.

Genome biology · Jan 3, 2019Peer-reviewedGenomics