Cedoljub Bundalovic-Torma

This paper uses gradient boosted decision trees to predict virulence of Pseudomonas syringae isolates on bean using genomic data, finding that PG3 strains are more host-specific than PG2 strains.

The paper introduces RecPD, a recombination-aware phylogenetic diversity metric, and demonstrates its utility in analyzing feature evolution under recombination and horizontal transfer.

The paper analyzes the global spread and structural impact of the D614G mutation in the SARS-CoV-2 spike protein, finding it predominant in Europe and neutral in function regarding ACE2 receptor binding.

This paper presents a systematic pipeline to classify bacterial operons and reveals the evolutionary landscape of biofilm machineries through phylogenetic clustering and genomic-proximity network analysis.