Author
Helmholtz MunichORCID 0000-0002-5516-7057Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Michaela Müller, Ana-Maria Cujba, Daria Romanovskaia…·Malte D. Luecken
The paper introduces scAtlasTb, a framework for building and optimizing single-cell reference atlases, demonstrating its application on three Human Cell Atlas projects.
Shrey Parikh, Daniel C. Strobl, Sara Jiménez…·Fabian Joachim Theis
The paper constructs a healthy human pancreas reference atlas to contextualize disease states and benchmark models.
Lieke Michielsen, Mohammad Lotfollahi, Daniel C. Strobl…·Ahmed Essam Mahfouz
The paper introduces treeArches, a framework for building and extending cell-type hierarchies by mapping new datasets to reference atlases and harmonizing annotations across studies.
Malte D. Luecken, Maren Büttner, Kridsadakorn Chaichoompu…·Fabian Joachim Theis
BBKNN, Scanorama, and scVI lead complex scRNA-seq integration in a 38-setup, nine-task, 14-metric benchmark; highly variable gene selection helps, whereas scaling favors batch removal over bio-conservation.