Author

Samuel Ruiz‐Pérez

Instituto Nacional de CancerologíaORCID 0000-0002-5577-8341Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Nicolás AlcaraziD· 2 shared Alejandra CerveraiD· 1 shared Alva BiraniD· 1 shared Anja GrothiD· 1 shared Clementina Castro HernándeziD· 1 shared Cynthia SámanoiD· 1 shared Ernesto Soto‐ReyesiD· 1 shared José Antonio Ocampo‐CervantesiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Nicolás AlcarazORCID

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2 papers

Recent·Most cited

CREPAS: a reproducible nascent chromatin sequencing analysis pipeline for epigenome replication studies

Samuel Ruiz‐Pérez, Qian Du, Alva Biran, Anja Groth, Nicolás Alcaraz

CREPAS is a Nextflow pipeline for analyzing nascent chromatin sequencing data, improving scalability, reproducibility, and compatibility across multiple chromatin assays.

bioRxiv · Jun 25, 2026 · PreprintBioinformatics

Retrotransposon expression is upregulated by aging and suppressed during regeneration of the limb in the axolotl (Ambystoma mexicanum)

Samuel Ruiz‐Pérez, Karla Torres‐Arciga, Cynthia Sámano, José Antonio Ocampo‐Cervantes, Alejandra Cervera, Clementina Castro Hernández, Ernesto Soto‐Reyes, Nicolás Alcaraz, Rodrigo González‐Barrios

This study shows that retrotransposon expression increases with age in axolotls but decreases during limb regeneration, suggesting a role in age-related regenerative decline.

bioRxiv · Apr 4, 2024 · PreprintGenomics