Author

Jianhua Ruan

The University of Texas at San AntonioORCID 0000-0002-5622-3137Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Organism:Drosophila· 1

Frequent Co-Authors

Maryam ZandiD· 2 shared Adi Laurentiu TarcaiD· 1 shared Attila GáboriD· 1 shared Buu Minh Thanh TruongiD· 1 shared Chang ShuiD· 1 shared Christoph HafemeisteriD· 1 shared Disheng Mao· 1 shared Duc TraniD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Maryam ZandORCID

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2 papers

Recent·Most cited

A completely parameter-free method for graph-based single cell RNA-seq clustering

Maryam Zand, Jianhua Ruan

This paper introduces scQcut, a parameter-free method for graph-based single-cell RNA-seq clustering that outperforms existing methods in accuracy and rare cell type identification.

bioRxiv · Jul 15, 2021 · PreprintBioinformatics

Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data

Jovan Tanevski, Thin Nguyen, Buu Minh Thanh Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang, Chang Shu, Ke Xu, Xiaoyu Liang, Ying Hu, Vu Pham, Xiaomei Li, Thuc Duy Le, Adi Laurentiu Tarca, Gaurav Bhatti, , Pablo Meyer

The paper predicts cellular positions in the Drosophila embryo using scRNA-seq data by benchmarking methods against spatially annotated genes.

Life Science Alliance · Sep 24, 2020Peer-reviewedSystems Biology