Mehmet Eren Ahsen

Correlated Drug Action as a Baseline Additivity Model for Combination Cancer Therapy in Patient Cohorts and Cell Cultures

This paper introduces a baseline model for drug combination effects in cancer, showing its utility in both clinical and cell culture settings.

exRNA Signatures in Extracellular Vesicles and their Tumor-Lineage from Prostate Cancer

The paper identifies exRNA signatures in circulating tumor extracellular vesicles (CTEVs) from prostate cancer patients and shows their differential expression post-tumor resection.

Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data

The paper predicts cellular positions in the Drosophila embryo using scRNA-seq data by benchmarking methods against spatially annotated genes.

Assessment of network module identification across complex diseases

The paper evaluates module identification methods across disease-relevant networks using GWAS data to identify top-performing algorithms and disease-associated modules.

A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data

The paper develops a machine learning classifier for asthma using nasal RNA sequencing data, achieving high accuracy across multiple test sets.