Author

Cristóbal Gallardo Alba

University of FreiburgORCID 0000-0002-5752-2155Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:multiple species· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Approach:statistical model· 1

Frequent Co-Authors

Alice Maria GianiiD· 2 shared Björn Andreas GrüningiD· 2 shared Delphine LarivièreiD· 2 shared Erich David JarvisiD· 2 shared Giulio FormentiiD· 2 shared Linelle Ann L. AbuegiD· 2 shared Nadolina BrajukaiD· 2 shared Olivier D. FedrigoiD· 2 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Alice Maria GianiORCID

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Author profile →

3 papers

Recent·Most cited

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

Delphine Larivière, Linelle Ann L. Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Andreas Grüning, Byung June Ko, Alexander Ostrovsky, Marc Palmada‐Flores, Brandon D. Pickett, Keon Rabbani, Agostinho Antunes, Jennifer Balacco, Mark Chaisson, Haoyu Cheng, Joanna Collins, , Giulio Formenti

The paper presents a scalable pipeline for reference genome assembly and evaluation, demonstrating its effectiveness across 51 vertebrate species using Galaxy.

Nature Biotechnology · Jan 26, 2024Peer-reviewedBioinformatics

Galaxy Training: A Powerful Framework for Teaching!

Saskia Hiltemann, Helena Rasche, Simon L. Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel J Blankenberg, Pratik Dilip Jagtap, Thomas Wollmann, Anthony Bretaudeau, Nadia Goué, Timothy J. Griffin, Coline Royaux, Yvan Le Bras, Subina Mehta, Anna Syme, , the Galaxy Training Network

The paper introduces Galaxy Training Network (GTN) as a framework for creating and sharing FAIR training materials for data analysis, with recent improvements to support educators and expand its use in various learning environments.

PLoS Computational Biology · Jan 9, 2023Peer-reviewedBioinformatics

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs

Giulio Formenti, Linelle Ann L. Abueg, Angelo Brajuka, Nadolina Brajuka, Cristóbal Gallardo Alba, Alice Maria Giani, Olivier D. Fedrigo, Erich David Jarvis

Gfastats, a C++ tool, computes genome assembly statistics in linear time, converts between FASTA, FASTQ and GFA files, and edits assemblies through a bidirected graph.

Bioinformatics · Jul 7, 2022Peer-reviewedBioinformatics✦ In-depth digest