Author

Carmel L. Howe

Imperial College LondonORCID 0000-0002-5827-8705Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 3 Bioengineering· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 4 Organism:mouse· 3 Approach:deep learning· 2 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Amanda J. FoustiD· 3 shared Herman Verinaz-JadaniD· 3 shared Pier Luigi DragottiiD· 3 shared Pingfan SongiD· 3 shared Chenchen SongiD· 1 shared Flavie LeseptiD· 1 shared Josef T. KittleriD· 1 shared Kate L. Y. ZhaoiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersNeuroscience

Amanda J. FoustORCID

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4 papers

Recent·Most cited

Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging

Carmel L. Howe, Kate L. Y. Zhao, Herman Verinaz-Jadan, Pingfan Song, Samuel J. Barnes, Pier Luigi Dragotti, Amanda J. Foust

This paper introduces a deep learning method to improve calcium imaging by reducing scattering and increasing throughput in light-field microscopy.

Proceedings of the National Academy of Sciences · Nov 25, 2025Peer-reviewedBioengineering

Physics-based Deep Learning for Imaging Neuronal Activity via Two-photon and Light Field Microscopy

Herman Verinaz-Jadan, Carmel L. Howe, Pingfan Song, Flavie Lesept, Josef T. Kittler, Amanda J. Foust, Pier Luigi Dragotti

This paper develops a physics-driven deep learning method to reconstruct neuronal activity from light field microscopy images, outperforming existing methods in quality and speed.

IEEE Transactions on Computational Imaging · Jan 1, 2023Peer-reviewedNeuroscience

Subcellular resolution 3D light field imaging with genetically encoded voltage indicators

Peter Quicke, Carmel L. Howe, Pingfan Song, Herman Verinaz-Jadan, Chenchen Song, Thomas Knöpfel, Mark A. A. Neil, Pier Luigi Dragotti, Simon R. Schultz, Amanda J. Foust

This study demonstrates sub-cellular resolution 3D light field imaging of voltage signals in acute mouse brain slices using genetically encoded voltage indicators.

Neurophotonics · Aug 28, 2020Peer-reviewedNeuroscience

Dedicated setup for the photoconversion of fluorescent dyes for functional electron microscopy.

Katharine L. Dobson, Carmel L. Howe, Y. Nishimura, Vincenzo Marra

This paper describes a cost-effective photoconversion setup for converting fluorescent signals into electron dense ones, improving workflow reliability and throughput for neuronal tissue analysis.

Frontiers in Cellular Neuroscience · Jul 24, 2019Peer-reviewedNeuroscience