Antonio González

The paper analyzes microbial community structure and phosphorus deficiency in a sediment core from Poza Roja 2, revealing compositional zones and extreme nutrient ratios.

This study shows that wetland drying in the Cuatro Cienegas Basin increased microbial spore abundance and dormancy, highlighting the impact of habitat loss on microbial communities.

The paper examines how environmental and maternal factors influence infant gut metabolism through microbiome and metabolome profiling in Bangladeshi mother-infant pairs.

The paper analyzes gut microbiome data from three countries to show diet-microbiota associations vary by location and strain.

This study predicts ecological relationships between human gut bacteria using time-series data from US travelers in Bangladesh, identifying both cooperative and competitive interactions with metabolic and genomic support.

Greengenes2 aligns 16S rRNA and shotgun metagenomic data using a whole-genome phylogeny, showing agreement in principal coordinates, taxonomy, and phenotype effect size.

Evident calculates effect sizes and performs power analysis for microbiome community differences, scaling to large datasets with many metadata covariates.

EMPress provides an interactive tool for visualizing phylogenetic trees alongside multi-omic data, enabling exploratory analyses of microbiome and metabolome datasets.

The paper introduces Qemistree, a method for analyzing metabolomics mass spectrometry data using hierarchical molecular fingerprints and chemical ontologies to explore chemical composition.

The paper introduces Qurro, a tool for interactively visualizing feature rankings and log-ratios in compositional omics data to improve exploratory analysis.