Author

Kalen Cantrell

University of California San DiegoORCID 0000-0002-6262-1668Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Assay:metagenomics· 2 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Antonio GonzáleziD· 2 shared Daniel T. McDonaldiD· 2 shared James T. MortoniD· 2 shared Qiyun ZhuiD· 2 shared Rob D. KnightiD· 2 shared Se Jin SongiD· 2 shared Aki Samuli HavulinnaiD· 1 shared Andrew P. BartkoiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Antonio GonzálezORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 19, 2022

Greengenes2 enables a shared data universe for microbiome studies

Daniel T. McDonald, Yueyu Jiang, Metin Balaban…·Rob D. Knight

Greengenes2 aligns 16S rRNA and shotgun metagenomic data using a whole-genome phylogeny, showing agreement in principal coordinates, taxonomy, and phenotype effect size.

40 citations

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsmSystemsPeer-reviewedMar 15, 2021

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

Kalen Cantrell, Marcus W. Fedarko, Gibraan Rahman…·Rob D. Knight

EMPress provides an interactive tool for visualizing phylogenetic trees alongside multi-omic data, enabling exploratory analyses of microbiome and metabolome datasets.

51 citations

metagenomicsexperimental assay

𝕏 PostBluesky