Author

Marcus W. Fedarko

University of California San DiegoORCID 0000-0002-6718-6925Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Antonio GonzáleziD· 2 shared Cameron MartinoiD· 2 shared Clarisse A. MarotziD· 2 shared Gibraan RahmaniD· 2 shared James T. MortoniD· 2 shared Rob D. KnightiD· 2 shared Anna Paola CarrieriiD· 1 shared Anupriya TripathiiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Antonio GonzálezORCID

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Author profile →

2 papers

Recent·Most cited

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

Kalen Cantrell, Marcus W. Fedarko, Gibraan Rahman, Daniel T. McDonald, Yimeng Yang, Thant Zaw, Antonio González, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L. Beck, Qiyun Zhu, Erfan Sayyari, James T. Morton, George Armstrong, , Rob D. Knight

EMPress provides an interactive tool for visualizing phylogenetic trees alongside multi-omic data, enabling exploratory analyses of microbiome and metabolome datasets.

mSystems · Mar 15, 2021Peer-reviewedBioinformatics

Visualizing 'omic feature rankings and log-ratios using Qurro

Marcus W. Fedarko, Cameron Martino, James T. Morton, Antonio González, Gibraan Rahman, Clarisse A. Marotz, Jeremiah J. Minich, Eric E. Allen, Rob D. Knight

The paper introduces Qurro, a tool for interactively visualizing feature rankings and log-ratios in compositional omics data to improve exploratory analysis.

NAR Genomics and Bioinformatics · Apr 28, 2020Peer-reviewedBioinformatics