Author

Mark D. Stares

Cancer Research UKORCID 0000-0002-5943-8440Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alexander LairdiD· 2 shared Cátia PesquitaiD· 2 shared Christophe BattailiD· 2 shared Fabio Massimo ZanzottoiD· 2 shared Javier A. AlfaroiD· 2 shared Stefan Nicholas SymeonidesiD· 2 shared Ajitha RajaniD· 1 shared Alejandra Escobar‐ZepedaiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Alexander LairdORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 8, 2025

Expanding the definition of MHC Class I peptide binding promiscuity to support vaccine discovery across cancers with CARMEN

Michal Mateusz Waleron, Ashwin Adrian Kallor, Aleksander Pałkowski…·Javier A. Alfaro

The paper expands the concept of MHC Class I peptide binding promiscuity to support vaccine discovery across cancers by analyzing data from 2,323 samples.

1 citation

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintJul 17, 2023

Microenvironment of metastasis reveals key predictors of PD-1 blockade response in renal cell carcinoma

Florian Jeanneret, Pauline Bazelle, Sarah Schoch…·Christophe Battail

The paper identifies key predictors of PD-1 blockade response in renal cell carcinoma by analyzing the tumor microenvironment of metastatic sites and developing a predictive TID score.

1 citation

humanbulk RNA-seq

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GenomicsbioRxivPreprintJan 18, 2022

In vitro demonstration of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome

Samuel C. Forster, Junyan Liu, Nitin Kumar…·Trevor D. Lawley

The paper demonstrates broad host range mobile genetic elements transferring antibiotic resistance from human gut commensals to enteropathogens.

DOI 10.1101/2022.01.18.476738

humanexperimental assay

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