Author

Ellen Knuepfer

Royal Veterinary CollegeORCID 0000-0002-6090-1877Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

Abdullah Fuaad Kadamany· 1 shared Alfred U’Ren CortésiD· 1 shared Amit Kumar SubudhiiD· 1 shared Anna Rosanas‐UrgelliD· 1 shared Anthony A. HolderiD· 1 shared Arnab PainiD· 1 shared Ashraf M. DadaiD· 1 shared Dalia Díaz-DelgadoiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Abdullah Fuaad Kadamany

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2 papers

Recent·Most cited

A Plasmodium knowlesi A1-H.1 transcriptome time course focusing on the late asexual blood stages

Katlijn De Meulenaere, Dalia Díaz-Delgado, Pieter Monsieurs, Erin Sauve, Alfred U’Ren Cortés, Ellen Knuepfer, Anna Rosanas‐Urgell

The paper presents a transcriptome time-course of Plasmodium knowlesi A1-H.1 during its intraerythrocytic developmental cycle, identifies stage-specific biomarkers, and develops a webtool for comparative analysis with Plasmodium vivax.

bioRxiv · Feb 19, 2026 · PreprintGenomics

PfAP2-MRP DNA-binding protein is a master regulator of parasite pathogenesis during malaria parasite blood stages

Amit Kumar Subudhi, Judith L. Green, Rohit Satyam, Todd Lenz, Rahul P. Salunke, Muhammad Shuaib, Ioannis Isaioglou, Steven Abel, Mohit Kumar Gupta, Luke E. Esau, Tobias Mourier, Raushan Nugmanova, Sara Mfarrej, Rupali Shivapurkar, Zenaida S Stead, , Arnab Pain

This study identifies PfAP2-MRP as a master regulator controlling parasite growth, chromatin structure, and var gene expression during malaria parasite blood stages.

bioRxiv · May 23, 2023 · PreprintGenomics