Stephanie Greer

The paper analyzes the Human Pangenome to identify conserved and polymorphic structural variations across diverse haploid assemblies.

The paper describes the development of a gastric cancer registry integrating clinical and genomic data to support translational research.

KmerKeys provides a web tool for efficient k-mer-based querying of genome assemblies and variant databases.

This study identifies a consensus microbiome for colorectal cancer by analyzing 924 tumors across eight RNA-Seq datasets, finding 114 microbial species consistently associated with tumors.

The paper develops a high-coverage sequencing approach to profile microsatellite and chromosomal instability in colorectal cancer, revealing co-occurrence of MSI and CIN features.

The paper introduces CTLR-Seq, a method to resolve complex genomic regions with high accuracy, and applies it to study CNVs associated with schizophrenia and autism.

The paper identifies TP53 genomic deletions as a poor prognosis marker in Stage III colorectal cancer using a new low-coverage whole-genome sequencing protocol.

The paper identifies ATG7 as a genetic risk factor for cholangiocarcinoma through germline mutations and population studies, linking autophagy dysfunction to cancer development.

The paper introduces a targeted sequencing method using linked read sequencing of CRISPR DNA targets to assemble large genomic regions and detect structural variants with high precision.

The paper provides a comprehensive whole-genome analysis of K562, identifying genomic structural features and their impact on functional genomics data.

This paper provides a haplotype-resolved genome analysis of the HepG2 cell line, identifying genomic features and allele-specific regulation to support functional genomics studies.