Author

Gi Won Shin

Stanford MedicineORCID 0000-0002-1865-5019Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:variant calling· 4 Assay:whole-genome sequencing· 4 Approach:experimental assay· 3 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Hanlee P. JiiD· 4 shared Stephanie GreeriD· 4 shared HoJoon LeeiD· 3 shared Alison Figueroa AlmedaiD· 2 shared Susan M. GrimesiD· 2 shared Alexander Eckehart UrbaniD· 1 shared Anna C. HookeriD· 1 shared Bo ZhouiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersGenomics

Hanlee P. JiORCID

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Author profile →

4 papers

Recent·Most cited

The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Stomach Malignancies

Alison Figueroa Almeda, Susan M. Grimes, HoJoon Lee, Stephanie Greer, Gi Won Shin, Madeline McNamara, Anna C. Hooker, Maya M. Arce, Matthew A. Kubit, Marie C. Schauer, Paul Van Hummelen, Cindy S. Ma, Meredith A. Mills, Robert J. Huang, Joo Ha Hwang, , Hanlee P. Ji

The paper describes the development of a gastric cancer registry integrating clinical and genomic data to support translational research.

Cancer Epidemiology Biomarkers & Prevention · Jun 30, 2022Peer-reviewedGenetic & Genomic Medicine

Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8

Gi Won Shin, Stephanie Greer, Erik S. Hopmans, Susan M. Grimes, HoJoon Lee, Lan Zhao, Laura K. Miotke, Carlos Jose Suarez, Alison Figueroa Almeda, Sigurdís Haraldsdóttir, Hanlee P. Ji

The paper develops a high-coverage sequencing approach to profile microsatellite and chromosomal instability in colorectal cancer, revealing co-occurrence of MSI and CIN features.

Genome Medicine · Sep 6, 2021Peer-reviewedGenomics

Complete and haplotype-specific sequence assembly of segmental duplication-mediated genome rearrangements using CRISPR-targeted ultra-long read sequencing (CTLR-Seq)

Bo Zhou, Gi Won Shin, Stephanie Greer, Lisanne Vervoort, Yi‐Ling Huang, Reenal Pattni, Marcus Ho, Wing Hung Wong, Joris Robert Vermeesch, Hanlee P. Ji, Alexander Eckehart Urban

The paper introduces CTLR-Seq, a method to resolve complex genomic regions with high accuracy, and applies it to study CNVs associated with schizophrenia and autism.

bioRxiv · Oct 23, 2020 · PreprintGenomics

Assembly of Mb-size genome segments from linked read sequencing of CRISPR DNA targets

Gi Won Shin, Stephanie Greer, Li C Xia, HoJoon Lee, Jun Liang Zhou, T. Christian Boles, Hanlee P. Ji

The paper introduces a targeted sequencing method using linked read sequencing of CRISPR DNA targets to assemble large genomic regions and detect structural variants with high precision.

Nucleic Acids Research · Jul 24, 2019Peer-reviewedGenomics