Author

M. Waleed Gaber

Baylor College of MedicineORCID 0000-0002-6192-0367Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alex J. SmithiD· 1 shared Andras Attila HeczeyiD· 1 shared C. Zhang· 1 shared Charles M. PerouiD· 1 shared Chih-Hung Hsieh· 1 shared Chung-Te ChangiD· 1 shared Constanze V. OehleriD· 1 shared David B. FlintiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperCancer Biology

Alex J. SmithORCID

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2 papers

Recent·Most cited

Anti-CSF-1R therapy with combined immuno- chemotherapy coordinate an adaptive immune response to eliminate macrophage enriched Triple Negative Breast Cancers

Diego A. Pedroza, Xueying Yuan, Fengshuo Liu, Hilda L. Chan, C. Zhang, William Bowie, Alex J. Smith, Sebastian J. Calderon, Nadia Lieu, Weiguo Wu, Paul Porter, Poonam Sarkar, Na Zhao, Constanze V. Oehler, Ondrej Peller, , Jeffrey M. Rosen

The paper shows that combining anti-CSF-1R therapy with chemotherapy and anti-PD-1 improves immune response in metastatic TNBC by reducing macrophages and increasing T/B cell infiltration.

Nature Communications · Jan 3, 2026Peer-reviewedCancer Biology

Coordinated regulation by lncRNAs results in tight lncRNA-target couplings

Hua‐Sheng Chiu, Sonal Somvanshi, Chung-Te Chang, Eric James de Bony de Lavergne, Zhaowen Wei, Chih-Hung Hsieh, Wim Trypsteen, Kathleen A. Scorsone, Ektaben Patel, Tien T. Tang, David B. Flint, Mohammad Javad Najaf Panah, Hyunjae Ryan Kim, Purva Rathi, Yan‐Hwa Wu Lee, , Pavel Sumazin

The paper identifies lncRNAs that coordinately regulate both transcription and post-transcriptional processing of their targets, showing tight coupling between lncRNA and target abundance, with implications for cancer gene regulation.

Cell Genomics · Jul 7, 2025Peer-reviewedBioinformatics