Author

Paul A. Bump

Hopkins Marine StationORCID 0000-0002-6210-9947Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Christopher J. LoweiD· 2 shared Alejandro Sánchez AlvaradoiD· 1 shared Amjad AskaryiD· 1 shared Bartosz Balczerski· 1 shared Blair W. Benham-PyleiD· 1 shared Bo WangiD· 1 shared Carolyn E. BrewsteriD· 1 shared Catherine E. Campbell· 1 shared

Activity by Year

2017-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersDevelopmental Biology

Christopher J. LoweORCID

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Author profile →

4 papers

Recent·Most cited

Developmental BiologybioRxivPreprintOct 31, 2025

Major cell type differences between larval and adult hemichordate body plans

Paul A. Bump, Carolyn E. Brewster, Laurent Formery…·Christopher J. Lowe

The paper examines cellular changes during metamorphosis in hemichordates using single-cell RNA sequencing, revealing distinct transcriptional programs between larval and adult stages.

1 citation

scRNA-seqstatistical model

Developmental BiologyDevelopmentPeer-reviewedMay 6, 2025

Chromatin profiling data indicate regulatory mechanisms for differentiation during development in the acoel Hofstenia miamia

Paul A. Bump, Kaitlyn J. Loubet-Senear, Sarah E. Arnold, Mansi Srivastava

The paper uses ATAC-seq to analyze chromatin accessibility during embryonic development in Hofstenia miamia, identifying regulatory mechanisms and gene networks involved in differentiation.

4 citations

ATAC-seqstatistical model

Developmental BiologybioRxivPreprintFeb 16, 2022

Comparisons of cell proliferation and cell death across life histories in the hemichordate Schizocardium californicum

Paul A. Bump, Margarita Khariton, Clover Stubbert…·Christopher J. Lowe

The paper examines cell proliferation and death patterns during development and metamorphosis in Schizocardium californicum, finding distinct proliferative patterns and limited cell death in larvae.

1 citation

experimental assay

Developmental BiologyDevelopmentPeer-reviewedJul 13, 2017

Genome-Wide Analysis of Facial Regionalization in Zebrafish

Amjad Askary, Pengfei Xu, Lindsey A. Barske…·Justin Gage Crump

The paper identifies genes with regional expression in zebrafish cranial neural crest cells and reveals complex regulation by Edn1 in facial development.

48 citations

zebrafishbulk RNA-seq