Author

Nicolás Berthet

Institut PasteurORCID 0000-0002-6369-7138Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alexander Atuya Tendu· 1 shared Alice Catherine HughesiD· 1 shared Audric BergeriD· 1 shared Christophe PaupyiD· 1 shared Davy JiolleiD· 1 shared Emilio MastrianiiD· 1 shared Gary WongiD· 1 shared Isabelle Moltini-ConcloisiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

Alexander Atuya Tendu

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2 papers

Recent·Most cited

BioinformaticsPeer Community JournalPeer-reviewedAug 27, 2026

ViroSeek: a viral detection pipeline for second-generation sequencing

Audric Berger, Margaux J. M. Lefebvre, Jacques Dainat…·Christophe Paupy

ViroSeek is a viral detection pipeline for second-generation sequencing data that provides a clear viral taxonomy table through automated quality control, sequence removal, assembly, and quantification.

DOI 10.24072/pcjournal.767

whole-genome sequencingstatistical model

𝕏 PostBluesky

MicrobiologyOne HealthPeer-reviewedOct 30, 2024

Differential prevalence and risk factors for infection with coronaviruses in bats collected during 2020 in Yunnan Province, China

Ruiya Li, Alexander Atuya Tendu, Yakhouba Kane…·Gary Wong

The paper examines CoV prevalence in bats from Yunnan Province, identifying new SARSr-CoVs and factors influencing their distribution and zoonotic risk.

1 citation

bacteria (other)metagenomics

𝕏 PostBluesky