Christophe Paupy

ViroSeek is a viral detection pipeline for second-generation sequencing data that provides a clear viral taxonomy table through automated quality control, sequence removal, assembly, and quantification.

This study identifies genomic signatures of local adaptation in Anopheles coluzzii across urban, rural, and sylvatic sites in Gabon, revealing distinct genetic responses to human-driven selection pressures and environmental heterogeneity.

This study identifies a cytochrome P450 gene variant that influences dengue virus susceptibility in Aedes aegypti mosquitoes.

The paper develops de novo chromosome-scale genomes for two Aedes mosquito species and compares them to a reference genome to reveal chromosomal rearrangements and gene expansion differences.

The paper introduces a high-throughput tool to detect arboviruses in mosquitoes from Zika-endemic regions, showing its effectiveness in identifying circulating viruses.

The paper describes a new species in the Anopheles gambiae complex and analyzes its evolutionary relationships and introgression events with other species.

The paper compares the midgut bacterial microbiome of geographically diverse Aedes aegypti colonies reared in the same insectary, finding they are similar, suggesting microbiota is environmentally determined.