Jacques Dainat

ViroSeek is a viral detection pipeline for second-generation sequencing data that provides a clear viral taxonomy table through automated quality control, sequence removal, assembly, and quantification.

The paper presents the first assembled genome of Haemoproteus majoris, a common avian malaria parasite, and discusses its genomic features and evolutionary significance.

EDTA v2 improves transposable element annotation in animal genomes by adding LINE/SINE detection and enhancing scalability and speed.

This study identifies how dengue virus uses mosquito Syntenin to package and secrete viral RNA into salivary exosomes, revealing a mechanism for viral RNA incorporation into extracellular vesicles.

The paper reports the genome analysis of a new Tequintavirus bacteriophage, Salmonella phage Tennessee Salten, and compares it to its closest relative, identifying unique and divergent genes.

This study evolves a virulent phage to expand its host range and increase virulence, finding convergent mutations in key genes.

TEsorter classifies transposable elements at the lineage level using conserved protein domains, offering speed, sensitivity, and precision for LTR retrotransposons.

The paper reports genome assemblies and annotations for three closely related Galerucella leaf beetle species, providing resources for studying host-parasitoid interactions and evolutionary biology.