Author

Paula Momo Cabrera

ETH ZurichORCID 0000-0002-6450-3075Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Assay:metagenomics· 3 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Organism:human· 1

Frequent Co-Authors

Nicholas A. BokulichiD· 3 shared Anthony SimardiD· 1 shared Chloe HermaniD· 1 shared Christos Konstantinos MatzorosiD· 1 shared Colin WoodiD· 1 shared Doriela GrabockaiD· 1 shared Evan K BolyeniD· 1 shared J. Gregory CaporasoiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

Nicholas A. BokulichORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

HighALPS: Ultra-High-Throughput Marker-Gene Amplicon Library Preparation and Sequencing on the Illumina NextSeq and NovaSeq Platforms

Lena Flörl, Paula Momo Cabrera, Maria Moccia, Serafina Plüss, Nicholas A. Bokulich

HighALPS adapts existing microbiome protocols for newer Illumina platforms, enabling ultra-high-throughput sequencing of 16S rRNA and ITS markers with high read depth and reliability.

mSystems · Feb 10, 2026Peer-reviewedMicrobiology

Domestic freezer storage: a solution for preserving stool microbiota integrity for at-home collection

Paula Momo Cabrera, Nicholas A. Bokulich, Petra Zimmermann

This study shows that storing stool samples in domestic freezers for up to six months preserves microbial composition and metagenomic data integrity, making it a viable alternative to -80°C storage for at-home collection.

Microbiology Spectrum · Feb 11, 2025Peer-reviewedMicrobiology

MOSHPIT: accessible, reproducible metagenome data science on the QIIME 2 framework

Michał Ziemski, Liz Gehret, Anthony Simard, Santiago Castro Dau, Vinzent Risch, Doriela Grabocka, Christos Konstantinos Matzoros, Colin Wood, Paula Momo Cabrera, Rodrigo Hernández-Velázquez, Chloe Herman, Keegan Evans, Michael Scott Robeson, Evan K Bolyen, J. Gregory Caporaso, Nicholas A. Bokulich

MOSHPIT provides a reproducible metagenome analysis tool built on QIIME 2, integrating validated tools and interfaces for scalable and accessible data science.

bioRxiv · Jan 27, 2025 · PreprintBioinformatics