Author

Monjoy Saha

National Cancer InstituteORCID 0000-0002-6470-3544Unclaimed ORCID profile · follow to get notified of new preprints

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Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:variant effect prediction· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

Charles LeduciD· 3 shared Jianxin ShiiD· 3 shared Lynette Marie SholliD· 3 shared Maria Teresa LandiiD· 3 shared Marina K. BaineiD· 3 shared Nathaniel RothmaniD· 3 shared Philippe JoubertiD· 3 shared Phuc H. HoangiD· 3 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Charles LeducORCID

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3 papers

Recent·Most cited

Genomic Characterization of Lung Cancer in Never-Smokers Using Deep Learning

Monjoy Saha, Thi-Van-Trinh Tran, Praphulla M. S. Bhawsar, Tongwu Zhang, Wei Zhao, Phuc H. Hoang, Karun Mutreja, Scott M. Lawrence, Nathaniel Rothman, Qing Lan B, Robert Homer, Marina K. Baine, Lynette Marie Sholl, Philippe Joubert, Charles Leduc, , Maria Teresa Landi

This paper develops a deep learning model to predict molecular alterations in never-smoker lung adenocarcinomas from histological images, achieving high accuracy for most features.

Modern Pathology · Feb 2, 2026Peer-reviewedPathology

A prognostic signature for lung adenocarcinoma in people who have never smoked

Wei Zhao, Tongwu Zhang, Xing Hua, Phuc H. Hoang, Mona Miraftab, Monjoy Saha, John P. McElderry, Jian Sang, Olivia W. Lee, Caleb Hartman, Azhar Khandekar, Sunandini Sharma, Frank J. Colón-Matos, Samuel Anyaso-Samuel, Difei Wang, , Maria Teresa Landi

The paper identifies three subtypes of NS-LUAD using RNA-seq data and develops a 60-gene signature that predicts survival across subgroups.

bioRxiv · Aug 13, 2025 · PreprintGenomics

Deciphering lung adenocarcinoma evolution and the role of LINE-1 retrotransposition

Tongwu Zhang, Wei Zhao, Christopher Wirth, Marcos Díaz‐Gay, Jinhu Yin, Monia Cecati, Francesca Marchegiani, Phuc H. Hoang, Charles Leduc, Marina K. Baine, William David Travis, Lynette Marie Sholl, Philippe Joubert, Jian Sang, John P. McElderry, , Maria Teresa Landi

This study analyzes 1024 lung adenocarcinomas to identify evolutionary patterns and mutational mechanisms, revealing distinct trajectories linked to smoking, ancestry, and retrotransposition.

bioRxiv · Mar 14, 2025 · PreprintGenomics