Mathieu Charles

The paper profiles RNA-seq from porcine intestinal organoids and tissues to assess their retention of regional identity and animal-specific molecular signatures.

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

The ChickenGTEx project provides a multi-tissue reference of regulatory variants in chicken, analyzing their functional impacts and utility in genetics, genomics, and evolutionary studies.

The paper creates an enriched gene atlas for the GRCg7b chicken assembly, increasing the number of annotated lncRNAs and PCGs and providing functional annotations across 47 tissues.

The paper presents PigGTEx, a resource linking genetic variants to transcriptomic phenotypes in pigs, showing pigs' similarity to humans in gene regulation and complex traits.

The paper detects recessive genetic defects in cattle using genomic data and life history analysis, identifying 33 new loci linked to juvenile mortality.

The paper develops a high-density 665 K SNP array for rainbow trout and demonstrates its utility in detecting linkage disequilibrium at shorter genomic distances.

The paper investigates the genetic basis of spontaneous masculinization in XX female rainbow trout using GWAS and WGS, identifying candidate genes associated with maleness.