Ying Chen

High-resolution diploid 3D genome reconstruction using Pore-C data

This paper introduces Dip3D, a method to reconstruct high-resolution diploid 3D human genomes from Pore-C data, achieving better performance than existing methods.

Falign: An effective alignment tool for long noisy 3C data

Falign improves alignment of fragmented long noisy 3C data by addressing fragment boundary issues and increasing data utilization.

Fast and accurate assembly of Nanopore reads via progressive error correction and adaptive read selection

NECAT improves Nanopore read error correction and de novo assembly, achieving higher accuracy and faster performance for genome assembly.

MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

MECAT provides an ultra-fast tool for mapping, error correction, and de novo assembly of single-molecule sequencing reads, achieving high-quality assemblies with reduced computational cost.