Author

Vignesh Shetty

Manipal Academy of Higher EducationORCID 0000-0002-6645-4975Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetic & Genomic Medicine· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Beauty Makamure· 1 shared Beth SampheriD· 1 shared Bianca Da Costa DiasiD· 1 shared Chuyi Liu· 1 shared Deanna Lynn GibsoniD· 1 shared Debaki Ranjan HowladeriD· 1 shared Ethel DauyaiD· 1 shared Etienne E. Müller· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenetic & Genomic Medicine

Beauty Makamure

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2 papers

Recent·Most cited

Phylo-Plex: A phylogenetically informed, low-cost amplicon sequencing platform for deployable high-resolution genomic epidemiology

Mathew A. Beale, Vignesh Shetty, Kirsty Ambridge, George Lacey, Sam Dougan, William Roberts-Sengier, Beth Sampher, Florent Lassalle, Matthew J. Dorman, Mahlape P. Mahlangu, Johanna M. E. Venter, Bianca Da Costa Dias, Martha Chipinduro, Tendai Washaya, Luanne Rodgers, , Nicholas Robert Thomson

Phylo-Plex is a low-cost amplicon sequencing method for high-resolution genomic epidemiology, achieving fine-scale lineage discrimination comparable to whole-genome sequencing in resource-limited settings.

Nature Communications · Jul 9, 2026Peer-reviewedGenetic & Genomic Medicine

The adoption of a westernized gut microbiome in Indian Immigrants and Indo-Canadians is associated with dietary acculturation

Leah D D'Aloisio, Mamatha Ballal, Sanjoy Ghosh, Natasha Haskey, Nijiati Abulizi, Ramin Karimianghadim, Chuyi Liu, Pacha Sruthi, Nagarajan Lakshmipriya, Vasudevan Sudha, Vignesh Shetty, Mrudgandha Purandare, Ushasi Bhaumik, Debaki Ranjan Howlader, Sepideh Pakpour, , Deanna Lynn Gibson

The study compares gut microbiomes of Indians, Indo-Immigrants, Indo-Canadians, and Euro-Canadian controls to assess the impact of dietary acculturation on microbiome composition and IBD risk.

npj Biofilms and Microbiomes · Aug 3, 2025Peer-reviewedMicrobiology