Erfan Sayyari

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

The paper describes a comprehensive genomic dataset from a tumor-normal pair with broad consent, generated using multiple sequencing technologies for benchmarking somatic variant detection.

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic datasets

EMPress provides an interactive tool for visualizing phylogenetic trees alongside multi-omic data, enabling exploratory analyses of microbiome and metabolome datasets.

Reference data based insights expand understanding of human metabolomes

This paper expands the interpretability of human metabolomes by using food-based annotations, increasing the fraction of molecular features understood 7-fold.

Multi-allele species reconstruction using ASTRAL

This paper extends ASTRAL to handle multi-allele datasets and evaluates its performance compared to NJst, finding that increasing gene sampling is more effective than increasing individual sampling for accuracy.